FileInformationDate
floxed_cells.pyFlox-Pattern Simulator26.12.2011
nightlight.pyAutomatically turn on/off light at twilight (sispmctl relais)16.12.2011
load_hg19.pyLoads the human genome (hg19) into a postgreSQL table.16.11.2011
fantom_extract.pyExtracts transcription-factor to target-gene interactions from the Fantom4 database1.11.2011
fasta_filter.pyFilters out all sequences containing the keyword in their description in a fasta file31.10.2011
mp3life.pyGame-of-Life music visualizer19.10.2011
pazar_extract.pyExtracts transcription-factor to target-gene interactions from the Pazar XML format17.10.2011
load_dbSNP_bcp.pyLoads dbSNP tables needed to determine the allele-frequencies of a snp_id (e.g. rs7079053) into pSQL8.10.2011
edge.cIf the returned value for a jpeg-image is above 20 (or 25?), the photo is in-focus.14.07.2011
get_promotor_from_genepos.plDownloads the sequence -2000 to +500 from the TSS of a list of mouse chromosome positions1.07.2011
island_conservation.plChecks list of vega ncRNA ids for conservation in mouse, based on the gene-island method21.06.2011
export_homologene.pyexports from psql all human genes which have a mouse homologue as human-tab-mouse list21.06.2011
downscale_check.pyScales all images in a directory that are not already scaled to some resolution20.06.2011
tfms.pySearches a transcription factor binding site matrix in a fasta file of DNA sequences30.05.2011
genoblast_parser.pyGet homologous promotor sequence based on gene against genome BLAST results30.05.2011
bernwetterParse and log weather from bernerwetter.ch16.05.2011
intro_zoomer.pyCreates zooming intro15.05.2011
baeren_collage.pyMerges four timelapses into one splitscreen15.05.2011
exonmap_example.rExample for analysis of Affymetrix Mouse Exon Arrays ST 1.0 using exonmap (untested)12.05.2011
smooth_timelapse.pyCreates a smooth linear timelapse using differences beween images8.05.2011
crucell_table.pyWeb interface version of crucell_table_cmd.py4.05.2011
crucell_table_cmd.pyConverts multiple measurements of overlapping parameters into measurement/parameter matrix with NA values4.05.2011
water_activator.pyActivates and programs the water daemon on the NSLU22.05.2011
waterd.pyWater (for plants on terrace) daemon1.05.2011
day_stats.pyNumber of photos for each day in a timelapse directory29.04.2011
peptide_twin_filter.pyRemoves glycopeptides which have twin peptides containing the same site with no glycosylation29.04.2011
popsim.cPopulation Simulator27.04.2011
popsim.hPopulation Simulator (general functions)27.04.2011
slugcam_controller.pyReboot NSLU2 whenever the linux kernel webcam driver crashes once about every 24 hours25.04.2011
slugcam.shCapture webcam (logitech) image on NSLU2 and upload to SheevaPlug25.04.2011
get_one_day.pyCopies photos of a specific day from a timelapse directory22.04.2011
tf_matrix_search.pySearches a transcription factor binding site matrix in a fasta file of DNA sequences31.03.2011
sync_labinv_resys.pySynchronizes labinv and resys user accounts25.03.2011
ipi_multitarget_search.pyAnalysis of MS glycopeptides27.02.2011
mogros_daemon.pyMOGROS Job Control Daemon17.02.2011
slice2etg.plFetches exons, transcripts and genes for slices of chromosomes28.01.2011
mouse_ncbi35to37.pyMaps coordinates from mouse NCBI v35 to v37, using output of UCSC "Lift Genome Annotations"27.01.2011
genomic_coord_match.pyCheck for overlap of target region with mutated regions from COSMIC26.01.2011
antibody_infos_lgc.pyDownload characteristics of a list of antibodies IDs from lgcstandards-atcc.org12.01.2011
antibody_infos_clc.pyDownload characteristics of a list of antibodies IDs from cell-lines-service.de12.01.2011
kegg_genes.pyRetrieves pathway member genes for a list of KEGG identifiers21.12.2010
gene_pool.pyCreates pool of genes from mouse and human samples18.11.2010
unixtime_photo_dir.pyRename all jpeg files in target directory and subdirectories to their EXIF unix time11.11.2010
remove_broken_images.pyRemoves broken images from a directory of (timelapse) photos9.11.2010
gene_go_mapping.pyCounts number of genes with association to a list of GO-IDs in all qual-MS samples4.11.2010
ncbi_alias.pyReturns the Official Gene Symbol for the provided alias name in the specified organism.28.10.2010
tma_form_parser.pyParse the "spot-number", "ratio", "PTEN" and "CEP10" fields of the TMA counting form21.10.2010
ext_copy.pyCopy files of a certain extension from sub-directories of target directory21.10.2010
addGlycopeps4.pyAdds glycopeptide list to meta database12.10.2010
ipi_dat_extract.pyCreate mapping from IPI to entrez,uniprot,ensembl from EBI FTP archive dat files7.10.2010
image_aspect.pyAdd borders to image to give it a defined aspect ratio24.09.2010
path2frames.pyWrite frames according to shortest path found by TSP solver13.09.2010
matrix_fill.pyCreates TSP solver script for R which uses concorde13.09.2010
imgcmp_matrix.pyCreates similiarity matrix from a directory of images13.09.2010
panomerge.pyCreates frames for a horizontal scroll on a panorama13.09.2010
node_remover.pyRemove nodes with only two edges23.08.2010
street_network_plot.pyPlot network by using node positions and edges only23.08.2010
edge_intersector.pyAdds nodes bases on edge intersection23.08.2010
crossings3.pyRecognizing crossings as nodes and streets as edges in street network images.18.08.2010
image_clust.cClusters neighbouring (red) pixels in a PNG image17.08.2010
pathfind2.cWidth-first-search for shortest path in white street network on black background PNG image16.08.2010
calImg.pyRenders calendar image29.07.2010
imgfind.cFinds position of a small image in a larger image12.07.2010
keggparser.pyParses gene interactions from KEGG pathways29.06.2010
timecopy.pyCopy the specified period from a timelapse directory14.06.2010
baeren_switcher.pyCreates timelapse by taking images from differnt reordered camera angles13.05.2010
flagparse.pyParses copy-paste from ciliaproteome.org to list of swissprot accessions11.05.2010
swissprot_sequences.pygets the protein sequence for a list of swissprot accessions11.05.2010
protein_list_blast_human.pyFind overlap of two protein list in FASTA format by using BLAST11.05.2010
short_timelapse.pyCreates short, balanced timelapse11.05.2010
glycopeps_sprot.pyChecks which glycosites are in swissprot and whether they are verified or what category of hypothetical10.05.2010
gene_add_tmd.pySorts list of genes into transmembrane, secreted, mitochondrial and GPI-anchored category29.04.2010
gene_hsa2mmu.pyMaps list of human gene symbols to mouse gene symbols28.04.2010
ug_hsa2mmu.pyMaps list of human unigene ids to mouse gene symbols, keeps fold changes23.04.2010
seqmapper.pycompares sequenced data to reference (obscure & obsolete)1.04.2010
consequence.plGet consequences of SNV30.03.2010
get_sequence3.plDownloads sequences for a list of gene symbols to fasta format30.03.2010
get_sequence2.plDownloads slice sequences for a list of gene symbols to fasta format30.03.2010
get_sequence.plDownloads slice sequences for a list of ensembl stable ids to fasta format30.03.2010
snvmix2tab.pyRewrites SNVMix2 output into tab separated format to be inserted into psql30.03.2010
get_gene_sequence2.plDownloads slice sequences for a list of ensembl stable ids to fasta format29.03.2010
swissprot_features.pyExtract Feature Table (FT) from uniprot_sprot.dat19.03.2010
ensembl_variation.pyConverts the ensembl variation database into one table15.03.2010
get_transcripts.plGet chromosomal positions of a list of ENSEMBL gene ids15.03.2010
least_change_path.pyOrder list of images by similiarity26.02.2010
fader.pyCreates series of difference images24.02.2010
hdr_movie_slow.pyCreates overlapping HDRs from a batch of images21.02.2010
fader2.pyColor-fade a batch of images21.02.2010
watchrat.pySaves images if something moves, automatically determines threshold9.02.2010
netcam_motion.pySaves netcam images if something moves8.02.2010
compare_images.cCompare two JPEG images7.02.2010
get_tower.pyDownloads JPEG images from ALLNET ALL2281 WLAN Camera7.02.2010
aa2png.pyAmino Acid Triplet Projection26.01.2010
jfj.pyDownload images from webcam as soon as it gets changed6.01.2010
katalog.cgiKatalog Layouter23.12.2009
mp3_sync.pySynchronizes movie frame progression to beats detected in mp3 audio10.12.2009
hdr_movie_filter.pyFilter specific times for HDR movie10.12.2009
hdr_movie.pyCreates HDR images from photo stream10.12.2009
sprite_mover5.pySprites moving around and colliding randomly29.11.2009
mod_sync4.pySynchronizes the speed of timelapse to a MOD channel29.11.2009
mod_sync3.pySynchronizes movement of sprites to MOD channels29.11.2009
median_image.cComputes median intensity image of any number of possibly resized input files30.10.2009
dnwa.cDynamic Needleman-Wunsch alignment matrix29.10.2009
lumiCalc.cComputes luminescence of an image12.10.2009
motion_detect.ctimelapse motion detection, image analysis part5.10.2009
motion_detect_cache.pytimelapse motion detection, caching part5.10.2009
no_motion.pyNested day timelapse2.10.2009
motion_detect.pytimelapse motion detection, file organisation part1.10.2009
trimClusterer.cMemory efficient proteomic clusterer, can be used even on A. thaliana!1.10.2009
theoretical_glycosites.pyCounts glycosylation patterns and mass-shifts in peptides27.07.2009
baerenpark_pipeline.shBaerenpark timelapse pipeline4.07.2009
baeren_kreis.pyRotating timelapse4.07.2009
baeren_merge.pyCreates merged sequence from selected cams4.07.2009
photo_mapping2.pyPhoto mapping using imgSeek1.07.2009
baeren_seek.pyUsing imgSeek module to separate webcams from a pooled images30.06.2009
film_kreis.plUsed to create "A whole year of time lapse"6.06.2009
photo_mapping.pyFinds original photos of scaled web images15.05.2009
equiLuminiscence.pySelect images with similar luma component for movie of equal brightness7.05.2009
new_hagen.pyRotating zoom timelapse5.05.2009
vimeo_upload.phpUploads movies to vimeo.com26.04.2009
pvalue_survdiff.rReturn the p-value of a survdiff object in R.22.04.2009
ixus_capture.cIxus Capture20.04.2009
nichtlustig.pyDownloads all nichtlustig comics16.04.2009
koho_wave.pyFinds groups of PCM sound peaks using a Kohonen SOM with quantisized wavelet transform as input vector7.04.2009
crow.pyFinds and saves peaks in WAV (PCM wave audio) files2.04.2009
pwgen.plRemembrable passwords20.03.2009
transfer_field.pyAdds field and content from source table to target table.24.02.2009
CATAN.PASPC version of "Die Siedler von Catan" (board game), programmed in April 1996.19.02.2009
bund.pyShow the Bern weather forecast in the next three days in a small window18.02.2009
chromosome_postition2.plList of chromosome regions (chrX:P1-P2) -> Name/IDs of genes at or near position18.02.2009
forum3.pyForum Romanum with simple computer players, AI version 313.02.2009
forum2.pyForum Romanum with simple computer players, AI version 211.02.2009
forum.pyForum Romanum with simple computer players9.02.2009
chromosome_postition.plList of chromosome regions (chrX:P1-P2) -> Name/IDs of genes at or near position8.02.2009
colourCount_quant.cCount the number of colours used in a JPEG image, faster version.1.02.2009
colourCount.cCount the number of colours used in a JPEG image26.01.2009
agilent2nimblegenConverts agilent ChIP array data to nimblegen format18.01.2009

Code:

Description: